Tag: Pyrex-Nitride AFM probes

An explicit model to extract viscoelastic properties of cells from AFM force-indentation curves

The viscoelastic behavior of soft materials, especially cells and tissues, has been extensively investigated due to its importance in many biological and physiological processes that take place during development and even disease.*
Many techniques are used to quantify the mechanical properties of cells, among them micropipette aspiration, optical stretching, deformability cytometry and atomic force microscopy (AFM).*

The AFM, in particular, is still nowadays one of the most popular methods due to its conformity with various material types and geometries and the rather simple analysis process of the material properties.*

For a typical AFM indentation measurement, an AFM cantilever, with a distinct AFM tip shape, moves toward the sample with a predefined velocity and indents it until a prescribed force is reached. The AFM cantilever then moves upwards while detaching from the sample. The deflection and displacement signals of the AFM cantilever are processed further to extract the mechanical properties of the sample. Generally, a Hertzian model is fitted to the approach part of the force-indentation curves to quantify the apparent Young’s modulus.*

When applying the Hertzian model, few assumptions need to be considered, such as the material being homogeneous, isotropic, and linearly elastic. *

Cells and tissues, however, show not only elastic but also viscous behavior that is evident from the hysteresis between the approach and retraction segments of the force-indentation curve. Consequently, assessing this viscoelastic behavior is imperative for understanding the complex nature of biological matter.*

A number of studies utilized AFM to measure the viscoelastic properties of cells in both time and frequency domains.*

Ideally, to investigate the whole range of the viscoelastic behavior one needs to probe the material for a long time and observe its response or apply oscillatory signals and evaluate its phase lag. These approaches require the user to alter the probing method and add several steps to account for the time-dependent drift or the effect of the hydrodynamic drag of the surrounding medium. On top of that, in many of studies, the biological materials were probed with a linear approach followed by immediate retraction. The force-indentation curves from these studies were used to evaluate the apparent elastic modulus of the probed material using the standard Hertzian model. However, additional information concerning energy dissipation can still be extracted from the same curves to evaluate the viscoelasticity of the material.*

In the article “An explicit model to extract viscoelastic properties of cells from AFM force-indentation curves”, Shada Abuhattum, Dominic Mokbel, Paul Müller, Despina Soteriou, Jochen Guck and Sebastian Aland propose a new fitting model to extract the viscoelastic properties of soft materials from AFM force-indentation curves. *

To construct the explicit relation of force and indentation, the authors first use a generalization of Maxwell and Kelvin-Voigt models to describe soft materials, and numerically simulate the indentation of such material with a spherical indenter. *

Shada Abuhattum et al. show that the proposed Kelvin-Voigt-Maxwell (KVM) model adequately captures the force-indentation curves of materials having different mechanical characteristics. *

Based on the simulation results, Shada Abuhattum et al. further propose an explicit force-indentation relation to be fitted to the force-indentation curves. This explicit relation simplifies the association of the mechanical properties with physically meaningful components and processes.
Finally, the authors apply the fitting model to a number of samples, including poroelastic and viscoelastic hydrogels as well as HeLa cells in two different cell cycle phases, interphase and mitotic. *

Shada Abuhattum et al. demonstrate that the distinct nature of the hydrogels, arising from the different crosslinking mechanisms, can be described with the fitting model. For the HeLa cells, the mitotic cells had a higher apparent elasticity and a lower apparent viscosity, implying a stiffer actin cortex and a diluted cytoplasm protein concentration, when compared with interphase cells.*

Their findings demonstrate that the proposed model can reliably extract viscoelastic properties from conventional force-indentation curves. Moreover, the model is able to assess the contribution of the different elastic and viscous elements, and thus allows a direct comparison between the viscoelastic nature of different materials.*

AFM measurements were preformed using a commercially available Atomic Force Microscope. To indent the samples, NanoWorld Pyrex-Nitride tipless AFM cantilevers PNP-TR-TL with a nominal spring constant of 0.08 mN/m were modified by gluing 5 μm diameter polystyrene beads to the underside of the AFM cantilevers using two component glue.*

The AFM cantilevers were calibrated prior to each experiment using the thermal noise method and their accurate spring constant ranged between 0.047-0.059 mN/m. For PAAm and agarose hydrogels, the AFM cantilever was lowered with a constant velocity (5, 10, or 15 μm/s) toward the surface of the sample until a force of 2 nN for agarose and 4 nN for PAAm was reached. These force set points accounted for an indentation in the range of 0.5–1 μm. For HeLa cells, the AFM cantilever was lowered with a constant velocity of 2 μm/s and the cells were indented until a force of 2 nN was reached, which accounted for an indentation depth in the range of 0.5–1.5 μm.*

Graphical abstract for the article “An explicit model to extract viscoelastic properties of cells from AFM force-indentation curves” by Shada Abuhattum, Dominic Mokbel, Paul Müller, Despina Soteriou, Jochen Guck and Sebastian Aland consisting of 4 squares. showing a symbol for numerical simulations in the top left square, an arrow points to the bottom left square showing a graph and a formula as symbols for fitting algorithm a further arrow points to the bottom right square symbolizing the extraction of viscoelastic properties. The pictures in this square show on the left a drawing of the end of a tipless AFM cantilever on which a sphere is glued pressing on a cell, on the right of this picture there is another picture showing the end of a tipless AFM cantilever on which a sphere is glued pressing on a sphere or bead, underneath a graph symbolizing the mechanical properties of hydrogels is shown. Above this square on the top right a graph with a symbol for the mechanical behavior of the indented material is shown.NanoWorld Pyrex-Nitride tipless AFM cantilevers PNP-TR-TL with a nominal spring constant of 0.08 mN/m were modified by gluing 5 μm diameter polystyrene beads to the underside of the AFM cantilevers using two component glue were used for the atomic force microscopy indentation measurements described in the cited article.
Graphical abstract for the article “An explicit model to extract viscoelastic properties of cells from AFM force-indentation curves” by Shada Abuhattum at al. 2022. NanoWorld Pyrex-Nitride tipless AFM cantilevers PNP-TR-TL with a nominal spring constant of 0.08 mN/m were modified by gluing 5 μm diameter polystyrene beads to the underside of the AFM cantilevers using two component glue were used for the atomic force microscopy indentation measurements described in the cited article.

*Shada Abuhattum, Dominic Mokbel, Paul Müller, Despina Soteriou, Jochen Guck and Sebastian Aland
An explicit model to extract viscoelastic properties of cells from AFM force-indentation curves
iScience, Volume 25, ISSUE 4, 104016, April 15, 2022
DOI: https://doi.org/10.1016/j.isci.2022.104016

The article “An explicit model to extract viscoelastic properties of cells from AFM force-indentation curves” by Shada Abuhattum, Dominic Mokbel, Paul Müller, Despina Soteriou, Jochen Guck and Sebastian Aland is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third-party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit https://creativecommons.org/licenses/by/4.0/.

Stiffness Mediated-Mechanosensations of Airway Smooth Muscle Cells on Linear Stiffness Gradient Hydrogels

Airflow limitation in obstructive airway disease is characterized by narrowing of the airway lumen from excessive contraction of airway smooth muscle (ASM) and remodeling of the airway wall which includes changes in the extracellular matrix (ECM) of the ASM layer.*

Previous studies on human airway smooth muscle cells ( hASMC ) have independently assessed the influence of extracellular matrix (ECM) proteins on substrates of supra-physiological stiffnesses, such as tissue culture plastic or glass.*

While the influence of discrete substrate stiffness on hASMC behavior has been examined, manipulation of both substrate stiffness and ECM proteins simultaneously (as expected in disease) has not been extensively modeled in vitro.*

In the article “Stiffness Mediated-Mechanosensation of Airway Smooth Muscle Cells on Linear Stiffness Gradient Hydrogels” Yong Hwee Tan, Kimberley C. W. Wang, Ian L. Chin, Rowan W. Sanderson, Jiayue Li, Brendan F. Kennedy, Peter B. Noble and Yu Suk Choi highlight the interplay and complexities between stiffness and ECM protein type on hASMC mechanosensation, relevant to airway remodelling in obstructive airway diseases.*

The authors first determined a physiological range of ASM layer stiffness using a porcine airway and used these empirical recordings to inform the fabrication of a linear stiffness gradient platform coated with different ECM proteins.*

Using this linear stiffness gradient platform, Yong Hwee Tan et al. profiled hASMC morphology, contractile function with alpha-smooth muscle actin (αSMA) and mechanisms of mechanosensation, specifically with nuclear translocalization of Yes-associated protein (YAP) and lamin-A expression.*

Yong Hwee Tan et al.’s assessment of hASMC mechanosensation utilized an innovative hydrogel platform delivering a linear stiffness gradient to understand stiffness-mediated cell behavior with an ECM substrate for cellular adhesion. *

The employment of a stiffness gradient that was designed after empirical measurements performed on ex vivo ASM tissue, enabled the presentation of physiologically relevant stiffnesses to study hASMC behavior.*

Using this platform, the authors of the article found that hASMC mechanosense underlying mechanical cues more than the types of proteins they are anchored to by screening hASMC morphology, contractile phenotype, and mechanomarker expression, with a few exceptions.*

While the authors acknowledge that the findings from their study were done using cells from only one donor they still think that their study provides a proof of concept for the relevance of hASMC mechanosensation to ECM stiffness, and is another step in the right direction for understanding the pathophysiological impact of airway remodeling in obstructive diseases and exploring potential avenues for improving therapy through greater fidelity of in vitro platforms that include key concepts of mechanosensation. *

Yong Hwee Tan et al. wanted to use the same method which is used to assess hydrogel stiffness, namely atomic force microscopy (AFM), to measure ASM stiffness.*

However, nanoscale measurements of ASM strips by AFM proved to be difficult due to an uneven tissue surface after de-epithelialization (Figure S1C, Supporting Information of the cited article), resulting in false force triggering.

To validate the translation of stiffness values measured from macroscale compression (ASM strips) to nanoscale indentation (AFM on hydrogels), Yong Hwee Tan et al. fabricated additional hydrogels of four different stiffnesses using well-characterized polyacrylamide and compared the stiffness of hydrogels measured by uniaxial compression tester and atomic force microscopy (Figure S2A, Supporting Information of the cited article).

The nanoscale stiffness of hydrogels was assessed using an atomic force microscope (AFM) with NanoWorld triangular Pyrex-Nitride PNP-TR AFM probes (the longer AFM cantilever beam – CB 2 – with 200 µm length was used).

These AFM tips probed hydrogels immersed in 1 × PBS with 2 nN, an approach velocity of 2 µm s−1 and a retraction velocity of 10 µm s−1.

Young’s modulus was determined from linear portions of contact-generated force curves using a custom-written code in Igor Pro.

All probe indentations were made in triplicate and averaged for a stiffness measurement in kilopascals (kPa).

An example force curve is shown in Figure S2B, Supporting Information of the cited article. Validation of a linear stiffness gradient was achieved with eight indentations on the hydrogel, 2 mm away from both edges of the hydrogel and at 1 mm intervals along the stiffness gradient axis. Measurements were plotted against displacement from the hydrogel edge (soft to stiff) (Figure 2B of the cited article).

Figure 2 from Yong Hwee Tan et al. 2024 “Stiffness Mediated-Mechanosensation of Airway Smooth Muscle Cells on Linear Stiffness Gradient Hydrogels”:Linear stiffness gradient hydrogel fabrication. A) A schematic of a two-step polymerization process. i) 120 µL of mixed polyacrylamide (PA) solution (% acrylamide + % bis-acrylamide) was added to the primary mold and left to polymerize under ii) a methacrylated coverslip for 20 min. iii) Wedge-shaped 1° gel was removed and flipped for placement of a iv) secondary mold before v) addition of a second 120 µL PA solution and polymerized under a vi) dichlorodimethylsilane-coated coverslip for 20 min. vii) Removal of coverslip and mold completes the fabrication of bi-layered stiffness gradient hydrogel. viii) the dotted arrow indicating the direction of gradient and atomic force microscopy (AFM) measurement. B) Young's moduli gradient measured by AFM. Twelve hydrogels were selected (one gel per batch) and assessed for stiffness, yielding a gradient of 4.0 kPa mm−1, with a range of 1.7 ± 1.2 to 29.6 ± 4.3 kPa (R2 = 0.998, n = 8). Data are presented as mean ± SD. NanoWorld triangular Pyrex-Nitride PNP-TR AFM probes were used to assess the stiffness of the hydrogels with atomic force microscopy.
Figure 2 from Yong Hwee Tan et al. 2024 “Stiffness Mediated-Mechanosensation of Airway Smooth Muscle Cells on Linear Stiffness Gradient Hydrogels”:
Linear stiffness gradient hydrogel fabrication. A) A schematic of a two-step polymerization process. i) 120 µL of mixed polyacrylamide (PA) solution (% acrylamide + % bis-acrylamide) was added to the primary mold and left to polymerize under ii) a methacrylated coverslip for 20 min. iii) Wedge-shaped 1° gel was removed and flipped for placement of a iv) secondary mold before v) addition of a second 120 µL PA solution and polymerized under a vi) dichlorodimethylsilane-coated coverslip for 20 min. vii) Removal of coverslip and mold completes the fabrication of bi-layered stiffness gradient hydrogel. viii) the dotted arrow indicating the direction of gradient and atomic force microscopy (AFM) measurement. B) Young’s moduli gradient measured by AFM. Twelve hydrogels were selected (one gel per batch) and assessed for stiffness, yielding a gradient of 4.0 kPa mm−1, with a range of 1.7 ± 1.2 to 29.6 ± 4.3 kPa (R2 = 0.998, n = 8). Data are presented as mean ± SD.

 

Figure S2 from Yong Hwee Tan et al. 2024 “Stiffness Mediated-Mechanosensation of Airway Smooth Muscle Cells on Linear Stiffness Gradient Hydrogels”:(A) Correlation of Young’s modulus from macroscale stiffness (UCT) assessment with nanoindentation (AFM), was conducted using cylindrical PA hydrogels of different Acrylamide %/Bis-acrylamide % derived from Tse and Engler [47] 10 %/0.06 %, 10 %/0.1 %, 10 %/0.15 % and 10 %/0.3 % (Linear regression, P < 0.0001, R2 = 0.9288, n = 4). Data are presented as mean  SEM. (B) An example force curve from atomic force microscopy with an approach velocity of 2 μm/s, until a 2 nN trigger force was registered, and retraction of indenter at 10 μm/s. NanoWorld triangular Pyrex-Nitride PNP-TR AFM probes were used to assess the stiffness of the hydrogels with atomic force microscopy.
Figure S2 from Yong Hwee Tan et al. 2024 “Stiffness Mediated-Mechanosensation of Airway Smooth Muscle Cells on Linear Stiffness Gradient Hydrogels”:
(A) Correlation of Young’s modulus from macroscale stiffness (UCT) assessment with nanoindentation (AFM), was conducted using cylindrical PA hydrogels of different Acrylamide %/Bis-acrylamide % derived from Tse and Engler [47] 10 %/0.06 %, 10 %/0.1 %, 10 %/0.15 % and 10 %/0.3 % (Linear regression, P < 0.0001, R2 = 0.9288, n = 4). Data are presented as mean  SEM. (B) An example force curve from atomic force microscopy with an approach velocity of 2 μm/s, until a 2 nN trigger force was registered, and retraction of indenter at 10 μm/s.
*Yong Hwee Tan, Kimberley C. W. Wang, Ian L. Chin, Rowan W. Sanderson, Jiayue Li, Brendan F. Kennedy, Peter B. Noble and Yu Suk Choi
Stiffness Mediated-Mechanosensation of Airway Smooth Muscle Cells on Linear Stiffness Gradient Hydrogels
Advanced Healthcare Materials 2024, 2304254
DOI: https://doi.org/10.1002/adhm.202304254

The article “Stiffness Mediated-Mechanosensation of Airway Smooth Muscle Cells on Linear Stiffness Gradient Hydrogels” by Yong Hwee Tan, Kimberley C. W. Wang, Ian L. Chin, Rowan W. Sanderson, Jiayue Li, Brendan F. Kennedy, Peter B. Noble and Yu Suk Choi is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third-party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit https://creativecommons.org/licenses/by/4.0/.

Correlation between plant cell wall stiffening and root extension arrest phenotype in combined abiotic stress of Fe and Al

The plasticity and growth of plant cell walls (CWs) is still not sufficiently understood on its molecular level. *

Atomic Force Microscopy (AFM) has been shown to be a powerful tool to measure the stiffness of plant tissues. *

In the article “Correlation between plant cell wall stiffening and root extension arrest phenotype in the combined abiotic stress of Fe and Al” Harinderbir Kaur, Jean-Marie Teulon, Christian Godon, Thierry Desnos, Shu-wen W. Chen and Jean-Luc Pellequer describe the use of atomic force microscopy (AFM) to observe elastic responses of the root transition zone of 4-day-old Arabidopsis thaliana wild-type and almt1-mutant seedlings grown under Fe or Al stresses. *

In order to evaluate the relationship between root extension and root cell wall elasticity, the authors used Atomic Force Microscopy to perform vertical indentations on surfaces of living plant roots. *

NanoWorld Pyrex-Nitride silicon-nitride PNP-TR AFM probes with triangular AFM cantilevers were used for the nanoindentation experiments with atomic force microscopy. (PNP-TR AFM cantilever beam 2 (CB2) with a typical force constant of 0.08 N/m and a typical resonant frequency of 17 kHz, typical AFM tip radius 10 nm, macroscopic half cone angles 35°). *

Force-distance (F-D) curves were measured using the Atomic Force Microscope and the PNP-TR AFM tips. *

Because of the heterogeneity of seedling CW surfaces, Harinderbir Kaur et al. used the recently developed trimechanics-3PCS framework for interpreting force-distance curves. The trimechanics-3PCS framework allows the extraction of both stiffness and elasticity along the depth of indentation and permits the investigation of the variation of stiffness with varied depth for biomaterials of heterogeneous elasticity responding to an external force. *

A glass slide with a glued seedling (see Figure 1 cited below) was positioned under the AFM cantilever with the help of an AFM optical camera. Due to the large motorized sample stage of the AFM, the glass slide was adjusted in such a way that the AFM cantilever could be positioned perpendicularly at the longitudinal middle of the glued root. The target working area, the transition zone, was 500 µm away from the root apex, almost twice the length of PNP-TR AFM cantilever. *

As shown in the article the presence of single metal species Fe2+ or Al3+ at 10 μM exerts no noticeable effect on the root growth compared with the control conditions. On the contrary, a mix of both the metal ions produced a strong root-extension arrest concomitant with significant increase of CW stiffness. *

Raising the concentration of either Fe2+or Al3+ to 20 μM, no root-extension arrest was observed; nevertheless, an increase in root stiffness occurred. In the presence of both the metal ions at 10 μM, root-extension arrest was not observed in the almt1 mutant, which substantially abolishes the ability to exude malate. The authors’ results indicate that the combination of Fe2+and Al3+ with exuded malate is crucial for both CW stiffening and root-extension arrest. *

It is shown that the elasticity of plant CW is sensitive and can be used to assess abiotic stresses on plant growth and stiffening. *

However, stiffness increase induced by single Fe2+ or Al3+ is not sufficient for arresting root growth in the described experimental conditions and unexpectedly, the stiffening and the phenotype of seedling roots such as REA are not directly correlated. *

Figure 1 from Harinderbir Kaur et al. 2024 “Correlation between plant cell wall stiffening and root extension arrest phenotype in the combined abiotic stress of Fe and Al”:Principle of nanomechanical measurement of seedling roots with atomic force microscopy. A seedling root (R) is deposited on a microscope slide using silicon glue (N, for Nusil). A fastening band of silicon is seen near the tip of the root (T). The thickness of the fastening band must be thin enough to avoid hindering the AFM support (S), but thick enough to withstand the bending of the root tip. The root is placed under the AFM cantilever (C) as observed by the AFM optical camera. The triangular shaped cantilever (200 µm long) was placed 500 µm away from the root tip in the transition zone where nanoindentation measurements proceeded (as shown). The seedling root and the AFM cantilever are placed within a liquid environment (growth solution, see Supplementary file of the cited article). AFM, atomic force microscopy. NanoWorld Pyrex-Nitride silicon-nitride PNP-TR AFM probes with triangular AFM cantilevers were used for the nanoindentation experiments with atomic force microscopy.
Figure 1 from Harinderbir Kaur et al. 2024 “Correlation between plant cell wall stiffening and root extension arrest phenotype in the combined abiotic stress of Fe and Al”:
Principle of nanomechanical measurement of seedling roots with atomic force microscopy.
A seedling root (R) is deposited on a microscope slide using silicon glue (N, for Nusil). A fastening band of silicon is seen near the tip of the root (T). The thickness of the fastening band must be thin enough to avoid hindering the AFM support (S), but thick enough to withstand the bending of the root tip. The root is placed under the AFM cantilever (C) as observed by the AFM optical camera. The triangular shaped cantilever (200 µm long) was placed 500 µm away from the root tip in the transition zone where nanoindentation measurements proceeded (as shown). The seedling root and the AFM cantilever are placed within a liquid environment (growth solution, see Supplementary file of the cited article). AFM, atomic force microscopy.

*Harinderbir Kaur, Jean‐Marie Teulon, Christian Godon, Thierry Desnos, Shu‐wen W. Chen and Jean‐Luc Pellequer
Correlation between plant cell wall stiffening and root extension arrest phenotype in the combined abiotic stress of Fe and Al
Plant, Cell & Environment 2024; 47:574–584
DOI: https://doi.org/10.1111/pce.14744

The article “Correlation between plant cell wall stiffening and root extension arrest phenotype in the combined abiotic stress of Fe and Al” by Harinderbir Kaur, Jean‐Marie Teulon, Christian Godon, Thierry Desnos, Shu‐wen W. Chen and Jean‐Luc Pellequer is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third-party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit https://creativecommons.org/licenses/by/4.0/.