Tag: biology AFM probes

Rapid changes in tissue mechanics regulate cell behaviour in the developing embryonic brain

In their short report “Rapid changes in tissue mechanics regulate cell behaviour in the developing embryonic brain” published in January 2019, Amelia J Thompson, Eva K Pillai, Ivan B Dimov, Sarah K Foster, Christine E Holt, and Kristian Franze describe how they used time-lapse in vivo atomic force microscopy (tiv-AFM), a method that combines sensitive upright epi-fluorescence imaging of opaque samples, with iterated AFM indentation measurements of in vivo tissue at cellular resolution and at a time scale of tens of minutes, in order to enable time-resolved measurements of developmental tissue mechanics.*

The technique developed by Thompson, Pillai et al. is a useful tool that can help elucidate how variations in stiffness control the brain wiring process. It could also be used to look into how other developmental or regenerative processes, such as the way neurons reconnect after injuries to thebrain or spinal cord, may be regulated by mechanical tissue properties.*

NanoWorld Arrow-TL1 tipless cantilevers were used for the AFM-based stiffness measurements. (Monodisperse spherical polystyrene beads were glued to the cantilever ends as probes.)

NanoWorld Arrow-TL1 tipless cantilever for atomic force microscopy
NanoWorld Arrow-TL1 tipless AFM cantilever

*Amelia J Thompson, Eva K Pillai, Ivan B Dimov, Sarah K Foster, Christine E Holt, Kristian Franze
Rapid changes in tissue mechanics regulate cell behaviour in the developing embryonic brain
eLife 2019; 8:e39356
DOI: https://doi.org/10.7554/eLife.39356

Please follow this external link to the full article: https://cdn.elifesciences.org/articles/39356/elife-39356-v1.pdf

Open Access: The article « Rapid changes in tissue mechanics regulate cell behaviour in the developing embryonic brain » by Amelia J Thompson et al. is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

 

Adhesion strategies of Dictyostelium discoideum – a force spectroscopy study

“Motile cells require reversible adhesion to solid surfaces to accomplish force transmission upon locomotion. In contrast to mammalian cells, Dictyostelium discoideum ( a soil dwelling amoeba) cells do not express integrins forming focal adhesions but are believed to rely on more generic interaction forces that guarantee a larger flexibility; even the ability to swim has been described for Dictyostelium discoideum (D.d.).”*

In order to understand the origin of D.d. adhesion, Nadine Kamprad, Hannes Witt, Marcel Schröder, Christian Titus Kreis, Oliver Bäumchen, Andreas Janshoff and Marco Tarantola  describe in their publication “Adhesion strategies of Dictyostelium discoideum – a force spectroscopy study”* how they realized and modified a variety of conditions for the amoeba comprising the absence and presence of the specific adhesion protein Substrate Adhesion A (sadA), glycolytic degradation, ionic strength, surface hydrophobicity and strength of van der Waals interactions by generating tailored model substrates. By employing AFM-based single cell force spectroscopy (using NanoWorld Arrow-TL2 tipless cantilevers) they could show that experimental force curves upon retraction exhibit two regimes described in detail in the article cited above. The study describes a versatile mechanism that allows the cells to adhere to a large variety of natural surfaces under various conditions.

Fig. 2 A from "Adhesion strategies of Dictyostelium discoideum – a force spectroscopy study": Cell parametrization: β, angle between the normal on the cell membrane and the cell axis; R1, contact radius between the cell and substrate; R0, equatorial cell radius; R2, contact radius between the cell and cantilever, ϕ1 contact angle towards the substrate; ϕ2, contact angle between the cell and cantilever, in the background is a section of the confocal image in B. B: morphology of the carA-1-GFP labelled D.d. cell attached to the cantilever subjected to a pulling force of 0.2 nN. NanoWorld Arrow-TL2 tipless cantilevers were used.
Fig. 2 A from “Adhesion strategies of Dictyostelium discoideum – a force spectroscopy study” by N. Kamprad et al.: Cell parametrization: β, angle between the normal on the cell membrane and the cell axis; R1, contact radius between the cell and substrate; R0, equatorial cell radius; R2, contact radius between the cell and cantilever, ϕ1 contact angle towards the substrate; ϕ2, contact angle between the cell and cantilever, in the background is a section of the confocal image in B. B: morphology of the carA-1-GFP labelled D.d. cell attached to the cantilever subjected to a pulling force of 0.2 nN.

*Nadine Kamprad, Hannes Witt, Marcel Schröder, Christian Titus Kreis, Oliver Bäumchen, Andreas Janshoff, Marco Tarantola
Adhesion strategies of Dictyostelium discoideum – a force spectroscopy study
Nanoscale, 2018, 10, 22504-22519
DOI: 10.1039/C8NR07107A

To read the full article follow this external link: https://pubs.rsc.org/en/content/articlehtml/2018/nr/c8nr07107a

Open Access The article “Adhesion strategies of Dictyostelium discoideum – a force spectroscopy study” by Nadine Kamprad, Hannes Witt, Marcel Schröder, Christian Titus Kreis, Oliver Bäumchen, Andreas Janshoff and Marco Tarantola is licensed under a Creative Commons Attribution 3.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/3.0/.

High-speed AFM height spectroscopy reveals microsecond-dynamics of unlabeled biomolecules

In their recent publication “High-speed AFM height spectroscopy reveals μs-dynamics of unlabeled biomolecules” in Nature Communications George R. Heath and Simon Sheuring develop and apply HS-AFM height spectroscopy (HS-AFM-HS, a technique inspired by fluorescence spectroscopy), a technique whereby the AFM tip is held at a fixed x–y position and  the height fluctuations under the tip in z-direction with Angstrom spatial and 10µs temporal resolution are monitored.

They demonstrate “how this technique can be used to simultaneously measure surface concentrations, diffusion rates and oligomer sizes of highly mobile annexin-V molecules during membrane-binding and self-assembly at model membranes and derive its kinetic and energetic terms. Additionally, HS-AFM-HS at specific positions in the annexin lattice where the freedom of movement is restricted to rotation allowed determination of the interaction free energies of protein-protein contacts.”* The applicability of this technique is wide and is discussed at the end of the publication.

NanoWorld Ultra-Short Cantilevers (USC) for Fast-/High-Speed AFM  ( USC-F1.2-k0.15 ) were used.

Congratulations to the authors to this publication which pushes the speed limits of AFM even further!

Increasing the temporal resolution of HS-AFM by reducing the dimensionality of data acquisition. a HS-AFM image of a DOPC/DOPS (8:2) membrane in the presence of annexin-V and NP-EGTA-caged Ca2+. Blue arrows illustrate the slow- (vertical) and the fast-scan axis (horizontal). Images can be captured at up to 10–20 frames s−1. b HS-AFM movie frames of A5 membrane-binding, self-assembly and formation of p6 2D-crystals upon UV-illumination induced Ca2+-release. c Average height/time trace of the membrane area in b. d Averaged HS-AFM image of an A5 p6-lattice overlaid with the subsequent line scanning kymograph, obtained by scanning repeatedly the central x-direction line as illustrated by the blue arrow with a maximum rate of 1000–2000 lines s−1. e Line scanning kymograph across one protomer of the non-p6 trimer, marked by * in d and e at a rate of 417 lines s−1 (2.4 ms per line). f Histogram of state dwell-times of the molecule in e. g HS-AFM image of an A5 p6-lattice partially covering a DOPC/DOPS (8:2) SLB surface during self-assembly. HS-AFM height spectroscopy (HS-AFM-HS) is performed following halting the x- and y-piezos to capture height information at a fixed position at the center of the image (illustrated by the target). h Schematic showing the principle of HS-AFM-HS. The AFM tip is oscillated in z at a fixed x,y-position, detecting single molecule dynamics such as diffusion under the tip. i Height/time trace obtained by HS-AFM-HS with the tip positioned at the center of image (g). The height/time trace allows determination of the local A5 concentration analyzing the time fraction of the occurrence of height peaks. j Dwell-time analysis of each height peak of diffusing A5 from 60 s height/time data and subsequent fitting of the distribution to multiple Gaussians (possible molecular aggregates corresponding to the fits with distinct dwell-times (τD) are shown above the graph). All scale bars: 20 nm, NanoWorld Ultra-Short Cantilevers (USC) for Fast-/High-Speed AFM ( USC-F1.2-k0.15 ) were used.
Figure 1 from “High-speed AFM height spectroscopy reveals μs-dynamics of unlabeled biomolecules”: Increasing the temporal resolution of HS-AFM by reducing the dimensionality of data acquisition. a HS-AFM image of a DOPC/DOPS (8:2) membrane in the presence of annexin-V and NP-EGTA-caged Ca2+. Blue arrows illustrate the slow- (vertical) and the fast-scan axis (horizontal). Images can be captured at up to 10–20 frames s−1. b HS-AFM movie frames of A5 membrane-binding, self-assembly and formation of p6 2D-crystals upon UV-illumination induced Ca2+-release. c Average height/time trace of the membrane area in b. d Averaged HS-AFM image of an A5 p6-lattice overlaid with the subsequent line scanning kymograph, obtained by scanning repeatedly the central x-direction line as illustrated by the blue arrow with a maximum rate of 1000–2000 lines s−1. e Line scanning kymograph across one protomer of the non-p6 trimer, marked by * in d and e at a rate of 417 lines s−1 (2.4 ms per line). f Histogram of state dwell-times of the molecule in e. g HS-AFM image of an A5 p6-lattice partially covering a DOPC/DOPS (8:2) SLB surface during self-assembly. HS-AFM height spectroscopy (HS-AFM-HS) is performed following halting the x- and y-piezos to capture height information at a fixed position at the center of the image (illustrated by the target). h Schematic showing the principle of HS-AFM-HS. The AFM tip is oscillated in z at a fixed x,y-position, detecting single molecule dynamics such as diffusion under the tip. i Height/time trace obtained by HS-AFM-HS with the tip positioned at the center of image (g). The height/time trace allows determination of the local A5 concentration analyzing the time fraction of the occurrence of height peaks. j Dwell-time analysis of each height peak of diffusing A5 from 60 s height/time data and subsequent fitting of the distribution to multiple Gaussians (possible molecular aggregates corresponding to the fits with distinct dwell-times (τD) are shown above the graph). All scale bars: 20 nm

*George R. Heath & Simon Scheuring
High-speed AFM height spectroscopy reveals μs-dynamics of unlabeled biomolecules
Nature Communicationsvolume 9, Article number: 4983 (2018)
DOI: https://doi.org/10.1038/s41467-018-07512-3

Please follow this external link for the full article: https://rdcu.be/bdaKU

Open Access The article “High-speed AFM height spectroscopy reveals μ s-dynamics of unlabeled biomolecules” by George R. Heath & Simon Scheuring is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.