Category: News

Membrane sculpting by curved DNA origami scaffolds

In the article “Membrane sculpting by curved DNA origami scaffolds” the authors show that “dependent on curvature, membrane affinity and surface density, DNA origami coats can indeed reproduce the activity of membrane-sculpting proteins such as BAR, suggesting exciting perspectives for using them in bottom-up approaches towards minimal biomimetic cellular machineries.”*

The AFM images for this article were taken in high-speed AC mode using NanoWorld Ultra-Short Cantilevers of the USC-F0.3-k0.3 type.

Supplementary Figure 5 b from Membrane sculpting by curved DNA origami scaffolds: Characterization of folded DNA origami nanoscaffolds. ( a ) Assembly of the folded bare origami structures L, Q, H was initially assessed via agarose gel (2%) electrophoresis analysis. Lanes containing marker DNA ladder (1kb) and M13 single - stranded p7249 sc affold (Sc) were also included. ( b ) Structure of folded bare origami L, Q and H was further validated using negative - stain transmission electron microscopy (TEM ; scale bar s : 100 nm ) and atomic force microscopy (AFM ; scale bar s : 200nm ).
Supplementary Figure 5 b from “Membrane sculpting by curved DNA origami scaffolds”:
Characterization of folded DNA origami nanoscaffolds.
b) Structure of folded bare origami L, Q and H was further validated using negative-stain transmission electron microscopy (TEM; scale bars: 100 nm) and atomic force microscopy (AFM; scale bars: 200nm).

*Henri G. Franquelim, Alena Khmelinskaia, Jean-Philippe Sobczak, Hendrik Dietz, Petra Schwille
Membrane sculpting by curved DNA origami scaffolds
Nature Communicationsvolume 9, Article number: 811 (2018)
DOI: https://doi.org/10.1038/s41467-018-03198-9

Please follow this link to the full article: https://rdcu.be/8zZi

Open Access: The article “Membrane sculpting by curved DNA origami scaffolds” by Franquelim et. al is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

Boron nitride nanoresonators for phonon-enhanced molecular vibrational spectroscopy at the strong coupling limit

In the article “Boron nitride nanoresonators for phonon-enhanced molecular vibrational spectroscopy at the strong coupling limit” the authors use, for the first time, phonon-polariton-resonant h-BN ribbons for SEIRA spectroscopy of small amounts of organic molecules in Fourier transform infrared spectroscopy. They demonstrate a new way to strongly couple infrared light and molecular vibrations, by utilizing phonon polariton nanoresonators made of hexagonal boron nitride, a Van der Waals material.

For the nanoscale Fourier transform infrared (nano-FTIR) spectroscopy mentioned in this article an oscillating Pt/Ir coated NanoWorld Arrow-NCPt AFM probe was illuminated by p-polarized mid-IR broadband radiation.

Figure 2 from "Boron nitride nanoresonators for phonon-enhanced molecular vibrational spectroscopy at the strong coupling limit": Far- and near-field spectroscopic characterization of h-BN ribbon arrays. (a) Sketch of the transmission spectroscopy experiment. Incoming light at normal incidence is polarized perpendicular to the ribbons to excite the HPhP resonance. (b) Transmission spectrum normalized to the bare substrate spectrum, T/T0, for a 20 × 20 μm2 h-BN ribbon array. Ribbon width w=158 nm, ribbon period D=400 nm and ribbon height h=40 nm. (c) Sketch of the nano-FTIR spectroscopy experiment. The near-field probing tip is scanned across (y-direction) the h-BN ribbon in 20-nm steps, as indicated by the dashed blue line. Near-field spectra are recorded as a function of the tip position (the detector signal is demodulated at the third harmonic of the tip tapping frequency, yielding s3(y, ω), as explained in the Materials and methods section). (d) Lower panel: Spectral line scan s3(y, ω), where each horizontal line corresponds to a spectrum recorded at a fixed y-position (vertical axis). Upper panel: Illustration of the real part of the z-component of the electric field (Re[Ez]) profile across the ribbon at the resonance frequency observed in the nano-FTIR spectra (lower panel). The AFM tip used was a NanoWorld Arrow-NCPT
Figure 2 from “Boron nitride nanoresonators for phonon-enhanced molecular vibrational spectroscopy at the strong coupling limit”: Far- and near-field spectroscopic characterization of h-BN ribbon arrays. (a) Sketch of the transmission spectroscopy experiment. Incoming light at normal incidence is polarized perpendicular to the ribbons to excite the HPhP resonance. (b) Transmission spectrum normalized to the bare substrate spectrum, T/T0, for a 20 × 20 μm2 h-BN ribbon array. Ribbon width w=158 nm, ribbon period D=400 nm and ribbon height h=40 nm. (c) Sketch of the nano-FTIR spectroscopy experiment. The near-field probing tip is scanned across (y-direction) the h-BN ribbon in 20-nm steps, as indicated by the dashed blue line. Near-field spectra are recorded as a function of the tip position (the detector signal is demodulated at the third harmonic of the tip tapping frequency, yielding s3(y, ω), as explained in the Materials and methods section). (d) Lower panel: Spectral line scan s3(y, ω), where each horizontal line corresponds to a spectrum recorded at a fixed y-position (vertical axis). Upper panel: Illustration of the real part of the z-component of the electric field (Re[Ez]) profile across the ribbon at the resonance frequency observed in the nano-FTIR spectra (lower panel).

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Marta Autore, Peining Li, Irene Dolado, Francisco J Alfaro-Mozaz, Ruben Esteban, Ainhoa Atxabal, Fèlix Casanova, Luis E Hueso, Pablo Alonso-González, Javier Aizpurua, Alexey Y Nikitin, Saül Vélez & Rainer Hillenbrand
Boron nitride nanoresonators for phonon-enhanced molecular vibrational spectroscopy at the strong coupling limit
Light: Science & Applications 7, 17172 (2018)
DOI: https://doi.org/10.1038/lsa.2017.172

For the full article please follow this external link: https://rdcu.be/7B0F

The article: Boron nitride nanoresonators for phonon-enhanced molecular vibrational spectroscopy at the strong coupling limit by Marta Autore et. al, is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/

Vertical Light Sheet Enhanced Side-View Imaging for AFM Cell Mechanics Studies

Atomic Force Microscopy is a powerful tool for evaluating cell mechanics.
In the recent article “Vertical Light Sheet Enhanced Side-View Imaging for AFM Cell Mechanics Studies” by Kellie Beicker, E. Timothy O’Brien III, Michael R. Falvo, Richard Superfine published in Nature Scientific Reports, the authors combine sideways imaging and a vertical light sheet illumination system integrated with AFM to achieve their results.

5 µm polystyrene beads attached to NanoWorld Arrow-TL1 tipless AFM probes were used.

igure 5 from Vertical Light Sheet Enhanced Side-View Imaging for AFM Cell Mechanics Studies: Membrane and nuclear displacements observed in response to force-rupture events between the AFM-tip and cell membrane. (a) Retraction portion of force-indentation curve with important points (A-G) identified. A, the point of zero force application to the cell, B-F, force-rupture peaks, and G, after bead releases from cell. (b) A closer examination of peaks E and F with sub-peaks of the E rupture event identified. No point is shown for E1 because this is the frame immediately following Peak E0. Inset indicates regions where displacement is measured between points E and F highlighted in green. These regions were determined through difference imaging using frames taken at E and F. (c) Regions of cell displacements determined through difference imaging highlighted in green for the sub-peaks indicated in (b). Yellow dashed lines indicate outline of AFM mounted bead. Scale bars = 5 um. NanoWorld Arrow-TL1 tipless AFM cantilevers were used.
Figure 5 from Beicker et. al Vertical Light Sheet Enhanced Side-View Imaging for AFM Cell Mechanics Studies: Membrane and nuclear displacements observed in response to force-rupture events between the AFM-tip and cell membrane. (a) Retraction portion of force-indentation curve with important points (A-G) identified. A, the point of zero force application to the cell, B-F, force-rupture peaks, and G, after bead releases from cell. (b) A closer examination of peaks E and F with sub-peaks of the E rupture event identified. No point is shown for E1 because this is the frame immediately following Peak E0. Inset indicates regions where displacement is measured between points E and F highlighted in green. These regions were determined through difference imaging using frames taken at E and F. (c) Regions of cell displacements determined through difference imaging highlighted in green for the sub-peaks indicated in (b). Yellow dashed lines indicate outline of AFM mounted bead. Scale bars = 5 um.

Kellie Beicker, E. Timothy O’Brien III, Michael R. Falvo, Richard Superfine
Vertical Light Sheet Enhanced Side-View Imaging for AFM Cell Mechanics Studies
Nature Scientific Reports,  8, Article number: 1504 (2018)
DOI: https://doi.org/10.1038/s41598-018-19791-3

For the full article please follow this external link: https://rdcu.be/59FM

The article Beicker et. al, Vertical Light Sheet Enhanced Side-View Imaging for AFM Cell Mechanics Studies is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.